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Questions - biomart

Is it possible to annotate ALL myIDs from Ensembl to symbol using R (biomaRt)?

I have a human datasets with genes ensembl and I want to annotate IDs to Symbol instead of ensembl in one of these datasets I have exactly 20176 genes I used two methods, but in boths I got NAs in som...
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Hicham Hboub

r

package

annotations

install.packages

biomart

Votes: 0

Answers: 1

Latest Answer

After downloading your shared data, steps taken: ensem <- read.csv('~/Downloads/Ensembl.txt', header=TRUE, sep ='\n') # here I cheated after finding # https://www.biotools.fr/human/ensembl_symbol_c...
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Chris

How to install biomaRt from bioconductor

I need biomaRT but it is not installing. How do I fix this? BiocManager::install("biomaRt") 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' fo...
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ksci

biomart

Votes: 0

Answers: 1

Latest Answer

This doesn't look like an error. The relevant part of the message is package(s) not installed when version(s) same as current; use force = TRUE to re-install: 'biomaRt' Essentially, this is saying ...
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Grimbough

Why do I have a different amount of estimated gene counts?

I am analyzing bulk RNA seq data and I used Kallisto to align my data to the transcriptome. Then, I used tximport to assign the gene names from ensembl to my counts. I am comparing the results I analy...
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pythonbeginner

r

bioinformatics

bioconductor

rna-seq

biomart

Votes: 0

Answers: 0

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