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Questions - rna-seq

DAVID enrichment analysis using R version 4.1.2

I need to run DAVID enrichment analysis on list of genes I got after differential expression analysis and I found that the package 'RDavidWebService' is not available any more for the new releases of ...
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Sagi

r

bioinformatics

rna-seq

Votes: 0

Answers: 0

Can I use HISAT2 for alignment when doing the Chip-seq?

When I was doing the RNA-seq, I use the HISAT2 to do the alignment. However, during the chip-seq analysis, bowtie2 is widely used to do the alignment. But there is a parameter for HISAT2 to do the DNA...
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satn

rna-seq

Votes: 0

Answers: 0

Receiving "TypeError: __init__() got an unexpected keyword argument 'basey'" In this tutorial

I've been trying to run through this tutorial (https://bedapub.github.io/besca/tutorials/scRNAseq_tutorial.html) for the past day and constantly get an error after running this portion: bc.pl.kp_gene...
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SorenFlying

python

python-3.x

rna-seq

scanpy

Votes: 0

Answers: 4

Latest Answer

I had a similar problem when I tried to scale the y-axis of my plot logarithmically. Thereby the base should be 2. I had success when I tried base=2 instead of basey=2. plt.yscale("log",base...
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Chris

save as dataframe python

I am really new in python, so I am doing a consultd and I want that the results be save like dataframe instead of be just print in the terminal. Here is my code: service = Service("https://www.m...
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ErikaC

python

bioinformatics

rna-seq

Votes: 0

Answers: 3

Latest Answer

Using a loop: df = pd.DataFrame({}) for row in query.rows(): data = {'primaryIdentifier': row["primaryIdentifier"], 'symbol': row["symbol"], 'org...
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Mario

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