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Substitute string sequences for BLOSUM62 values in R
I have a df with several peptide sequences. For each sequence, I need to replace each AA for the BLOSUM62 values stored in another matrix.
|Sequences|
|:--------|
|KIFREIIHL|
|LALTYRGLI|
|DIKGLIVYR|
|...
SPT_Bio
Votes: 0
Answers: 1
GRanges to subset by overlap within 200kb of start or end of a gene
I have two GRanges datas and I would like to subset them by overlaps such that the overlap could also be present within 200kb of either start or end of the gene.
I was using the following command
subs...
shweta godbole
Votes: 0
Answers: 1
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
I am currently trying to install AnnotationHub but I am running into problems. I use R 4.0.4, renv (version 0.15.4) and BiocVersion 3.12.
When I run BiocManager::install("AnnotationHub"), I...
nhaus
Votes: 0
Answers: 1
How to add analysis of variance to a Bioconductor plot that combines jitter and boxplots?
I made a plot that shows median expression of some markers across different cell populations.
I made it using a Bioconductor package that is based on ggplot and the final result is a ggplot object. He...
Cam
Votes: 0
Answers: 0