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snakemake warning that code used to generate one or several output files has changed, but they haven't
I'm running into an issue where when I dry-run (or run for real) a rule I get this message...
The code used to generate one or several output files has changed:
To inspect which output files have ...
PD Schloss
Votes: 0
Answers: 2
Using wildcards in slurm resources directive with snakemake
I'm using snakemake to create rules and submit jobs on our HPC with slurm. To make the output "prettier", I would like to be able to set the job_name argument in the resources directive so t...
PD Schloss
Votes: 0
Answers: 1
Specify a color for each rule in Snakemake DAG
I'm running snakemake -n -c1 --dag | dot -Tsvg > dag.svg to get the DAG file.
I was wondering if I could somehow set the color scheme for every node. For example, in the picture below, rule samtool...
ivan199415
Votes: 0
Answers: 1
Snakemake: Manually creating a wildcard from a string
Suppose I have two strings, a template and target string.
Template string: "param1~{wildcard1}/param2~{wildcard2}_param3~{wildcard3}"
Target string: "param1~1.1/param2~a_b_c_param3~345&...
yippingAppa
Votes: 0
Answers: 2