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“unable to find the specified executable file” when trying to use mpirun on julia
I am trying to run my julia code on multiple nodes of a cluster, which uses Moab and Torque for the scheduler and resource manager.
In an interactive session where I requested 3 nodes, I load julia an...
knkn1711
Votes: 0
Answers: 1
OpenMPI does not recognize multiple nodes?
I am trying to run a Julia script in paralell on a cluster.
The cluster uses Moab and Torque for the scheduler and resource manager.
Since SSH seems to be restricted, I use MPI for multiprocessing.
I ...
knkn1711
Votes: 0
Answers: 0
snakemake - accessing config variables from cluster submission wrapper
I am using a cluster submission wrapper script with snakemake --cluster "python qsub_script.py". I need to pass a global variable, taken from the config['someVar']. This should be applied to...
soungalo
Votes: 0
Answers: 1
How to scatter chunks of data on cluster nodes without running out of memory
I wrote a code in Python which implements mpi4py to scatter chunks of data across the processors of a cluster. Each processor writes the given chunk of data into a .txt file, then all these .txt files...
Roland
Votes: 0
Answers: 1