Questions about phylogeny
Read more about phylogeny
python (65.1k questions)
javascript (44.2k questions)
reactjs (22.7k questions)
java (20.8k questions)
c# (17.4k questions)
html (16.3k questions)
r (13.7k questions)
android (12.9k questions)
What can be the reason of getting negative branches lengths after treeannotator analysis?
I thought that BEAST does not allow negative lengths of branches on prior distribution level so I got very surprised when I have looked at my consensus tree in FigTree.
What could be the reason of th...
Vovin
Votes: 0
Answers: 1
Missing ',' in line when Biopython reads a nexus tree
I want to edit a tree that I got from BEAST2 treeannotator in nexus-format.
Usually I use the module Phylo from Biopython for such work but Phylo.read(r"filename.tree", "nexus") ga...
Vovin
Votes: 0
Answers: 1
Cmake does not see OpenCL
I am trying to install OpenCL for BEAGLE. First, I have downloaded intel_sdk_for_opencl_applications_2020.3.494.tar.gz from here. Then I unzipped it & run install.sh. Installation was successful. ...
Vovin
Votes: 0
Answers: 2
newick format: number directly after closed parenthesis?
I have a phylogenetic tree in Newick format. A sample from the full string looks like this:
"...(tet_rpg.hmm_GCA_000638155.1_seq1:0.001565531,tet_rpg.hmm_GCA_000507745.1_seq1:0.001565235)0.000:5e...
Gragas
Votes: 0
Answers: 1