1 year ago
#272891
marie
scale_color_gradient2 in gheatmap
I am drawing phylogenetic tree and added heatmap with gheatmap(). I would like to change color scale bar using low, mid, and high point. I thought scale_color_gradient2() made that possible, but it doesn't work.
p <- ggtree(tree.c$scenario.1, layout='fan',branch.length = "none",
options(ignore.negative.edge=TRUE))
plot(p)
group <- as.matrix(fit0[,7])
rownames(group)<-tree.c$scenario.1$tip.label
colnames(group)<-c("Temperature")
library(ggnewscale)
p2 <- p + new_scale_fill()
gheatmap(p2, group, offset=1, width=.2,
colnames= F, colnames_offset_y = .2) +
scale_color_gradient2( low = "blue", mid = "white", high = "red") +
theme(legend.key.size = unit(5, 'cm'),
legend.text=element_text(size=20),
plot.title = element_text(size=100, hjust = 0.5, vjust = 1.5))
But it showed the error "scale for 'y' is already present. adding another scale for 'y', which will replace the existing scale. heatmap" And low, mid (midpoint = 0), and high color were not applied. How is it fixed or how do I set the color gradient with midpoint?
Thanks in advance!
r
ggplot2
ggtree
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