1 year ago
#235629
Robert Alexander
Using RDFLIB to fetch elements for every class
I have an OWL RDF data file that contains several data such as the following example:
<!-- http://purl.obolibrary.org/obo/OGMS_0000014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OGMS_0000014">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000123"/>
<obo:IAO_0000115 xml:lang="en">A representation that is either the output of a clinical history taking or a physical examination or an image finding, or some combination thereof.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000119>http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf</obo:IAO_0000119>
<obo:IAO_0000232>creation date: 2010-07-19T10:18:02Z</obo:IAO_0000232>
<rdfs:label>clinical finding</rdfs:label>
</owl:Class>
and need to extract only the strings following the rdfs:label and the <obo:IAO_0000115 xml:lang="en"> tags for each class.
I am successfully reading the RDF file as follows:
from rdflib import Graph, URIRef
g = Graph()
g.parse("ogms_20210819.owl")
and then loop through it as usual:
# Loop through each triple in the graph (subj, pred, obj)
for subj, pred, obj in g:
print(subj, pred, obj)
but I'm not understanding how to fetch only the text from the two tags I need for each class.
Thanks a lot for any help.
python
rdf
owl
rdflib
0 Answers
Your Answer